Scaffold Ga0193067_1020569

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0193067_1020569

Scaffold Ga0193067_1020569

Overview

Basic Information
Taxon OID	3300018659 Open in IMG/M
Scaffold ID	Ga0193067_1020569 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_142 - TARA_N000003102 (ERX1782249-ERR1712111)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Canada's Michael Smith Genome Sciences Centre
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	964
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Gulf of Mexico: TARA_142
Coordinates	Lat. (^o)	25.6168	Long. (^o)	-88.4532	Alt. (m)		Depth (m)	125
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F102196	Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193067_10205693	F102196	GGAG	LSLQQVRDVEAAITMAKGVVLLRILAMKEKETATDQEMEVSMMVMLDARETLFVEAIIAFSLELISIPRTIAVRDQIIPHKILHHLLEAILVNNNMDGDHGQLGQLVAHNVDLVKNLEGELVRAYNVAQISSTSLKIRKDLVKAKDATIFSHR

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