Scaffold Ga0193377_1002896

Overview

Basic Information

• Taxon OID: 3300018636
• Scaffold ID: Ga0193377_1002896
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_122 - TARA_N000001943 (ERX1782245-ERR1711897)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1209
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Choanoflagellata → Craspedida → Salpingoecidae → Monosiga → Monosiga brevicollis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_122
• Coordinates
  • Lat. (^o): -8.996
  • Long. (^o): -139.2815
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055398	Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193377_10028961	F055398	N/A	GNGAVGDPGNNYPDYIQEPGYDMPMYYNYAPKRDIPRKSNRVEKSEAAQKMFNLEEYPYNDPYNTFYFSERGAVSQMAGLDIDVLGALCTLRKTDNVYSKDYGLMDYGNMEEFDDAGTTFCIEPVKVTELGEWNFLCTRNNNFSNRSQKGTLQVSNSAQQWVSATSSGTSGDAKNGQAKIVILPASVREGDSLDFMVTTWLNRGEESTIVQLSGADGGEFPSDALVDDRWIELWIPYTGKSLSYPKAWYRASADDEWKEHSDASIEYDAETSFGVVQVSQGGFYTITNQPDILAYIAVILGVALFGTAMYFVVRRNCVRKS