Scaffold Ga0188875_1004342

Overview

Basic Information

• Taxon OID: 3300018629
• Scaffold ID: Ga0188875_1004342
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS852_ls4
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1049
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Synurophyceae → Synurales → Neotessellaceae → Neotessella → Neotessella volvocina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001145	Metagenome / Metatranscriptome	765	Y
F001219	Metagenome / Metatranscriptome	744	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188875_10043421	F001145	N/A	MVLDFSTFLMNNSEEAFIQLNPNILETNVQNIVILLGILLYANKVSFSVSLENRQKEIIQTIENAQKDVLNASNYYYLAEKGFTQSLFWLQSWKVLYEKDKTEFVTSKYNLVKKGLTETFETTESLIINFENKAFASLQRYMIFVTASRILRKFLFLSEKEQSKLIEVTITKLGG
Ga0188875_10043422	F001219	N/A	TATNYLNMILSNTLFLSARSLFDFDLTFVVELTLFVILALVVTNNFVNPVSNELNKRSEFINYTLRKSTILLNFGYERLTECVSLLTAEISEMNRQMKNTRTFTNEKFETEVTYAQQQNSKILSKVKGDLSIKSAFLFANLNEDLTSLTDKFFEKKFKSIS