NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0192881_1000023

Scaffold Ga0192881_1000023


Overview

Basic Information
Taxon OID3300018603 Open in IMG/M
Scaffold IDGa0192881_1000023 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000756 (ERX1782239-ERR1711906)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterCanada's Michael Smith Genome Sciences Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6369
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Atlantic Ocean: TARA_067
CoordinatesLat. (o)-32.2401Long. (o)17.7103Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001506Metagenome / Metatranscriptome681Y
F012678Metagenome / Metatranscriptome278Y

Sequences

Protein IDFamilyRBSSequence
Ga0192881_10000231F012678AGAAGMLNQHSLEEIADIHNLLGDIKKEYEEGIKPILIKNSPSRFRNPHTVPK
Ga0192881_10000239F001506N/AMKKNKKRRERRESKAILYPSSHKSALKTFHIKYDKKLSSFAKLVLNSFRNKYLYYAMDDILYSFESNPKEKENLLEILKSLVLLLQNNFFVNSFDIWIHEIYINEVSKVNKFLTNDFSNLEQGTCITIKLLYKKPISPKKLDSIW

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