Scaffold Ga0192881_1000023

Overview

Basic Information

• Taxon OID: 3300018603
• Scaffold ID: Ga0192881_1000023
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_067 - TARA_N000000756 (ERX1782239-ERR1711906)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6369
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Atlantic Ocean: TARA_067
• Coordinates
  • Lat. (^o): -32.2401
  • Long. (^o): 17.7103
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F012678	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0192881_10000231	F012678	AGAAG	MLNQHSLEEIADIHNLLGDIKKEYEEGIKPILIKNSPSRFRNPHTVPK
Ga0192881_10000239	F001506	N/A	MKKNKKRRERRESKAILYPSSHKSALKTFHIKYDKKLSSFAKLVLNSFRNKYLYYAMDDILYSFESNPKEKENLLEILKSLVLLLQNNFFVNSFDIWIHEIYINEVSKVNKFLTNDFSNLEQGTCITIKLLYKKPISPKKLDSIW