Scaffold Ga0192851_1007033

Overview

Basic Information

• Taxon OID: 3300018600
• Scaffold ID: Ga0192851_1007033
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_064 - TARA_N000000535 (ERX1782170-ERR1711950)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 770
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Hymenoptera → Apocrita → Aculeata → Apoidea → Apidae → Apinae → Apini → Apis → Apis mellifera (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: Indian Ocean: TARA_064
• Coordinates
  • Lat. (^o): -29.4964
  • Long. (^o): 37.9974
  • Depth (m): 60

Associated Families

Family	Category	Number of Sequences	3D Structure?
F097456	Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0192851_10070331	F097456	AGGAG	MAETKLTGTYKHQKNENYNDYLKALNMGWFKRKTAVSSSPIEKVMEGSAGTLNFKRICGINNTVEQTISLGEEHSETLPNGEVVRGITVREGDHNLITRLEHKKMGKMELIREFSKDGMVMYIKILDRDFEAIRYFKRQL