Scaffold Ga0193498_1003752

Overview

Basic Information

• Taxon OID: 3300018586
• Scaffold ID: Ga0193498_1003752
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_137 - TARA_N000002942 (ERX1782243-ERR1712114)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1147
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Pacific Ocean: TARA_137
• Coordinates
  • Lat. (^o): 14.2005
  • Long. (^o): -116.7031
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014356	Metatranscriptome	263	N
F035620	Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193498_10037521	F014356	GGAG	VDYIEEPAEVCVPTLETKCDQEDGGQTLELRTEEECQDVVRTVCVERHNVVDNEVCAFSYTLHPVPTEAKLVEPHWAEVCHQETICLNPHHAKPSYGAPPAYCHEEIHETCALEPVLEPVVRPVTVSLPQPVEVCINKQIVLPYLECEKVKDRHCMVVPRAGKGYKYQIDKCSVEKGEPACQETLLQLPQQACLQKIERVNTVYTTPAKVSYSG
Ga0193498_10037522	F035620	GAGG	MSYGGMIGRPGWSVVGSCLVVNKRRLSMCNMLVVDCSYRSCMVDLVVVGSYRSSNDGRLVAMADTGERATNSVCCVEVALRTDQGSQAGADKQDRLMTEHGCPSSNLNRLSNPH