Scaffold Ga0188836_100140

Overview

Basic Information

• Taxon OID: 3300018558
• Scaffold ID: Ga0188836_100140
• Source Dataset Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS676_0p8
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2110
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 62.09708
  • Long. (^o): 18.5427
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F020144	Metagenome / Metatranscriptome	225	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0188836_1001405	F000919	GGAGG	MRFRNIEFRWSTYNKKHELVKWYKLEERNYCYVVAFFDKTNSGWDMRTVGDRFFEDKDAFVVGKYALEFLNEIFEIEKNEEELK
Ga0188836_1001406	F020144	N/A	MTNSYTLIPNTQVLRSKIDVFEMTDPYDENITHRVELTVDNDGVFITSCEKAVREDISIGHKDVAIAVAKAILEAYEIS