Scaffold Ga0193057_104539

Overview

Basic Information

• Taxon OID: 3300018524
• Scaffold ID: Ga0193057_104539
• Source Dataset Name: Metatranscriptome of marine eukaryotic protist communities collected during Tara Oceans survey from station TARA_132 - TARA_N000002422 (ERX1782099-ERR1711883)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: Canada's Michael Smith Genome Sciences Centre
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 775
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Patellogastropoda → Lottioidea → Lottiidae → Lottia → Lottia gigantea (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: North Pacific Ocean: TARA_132
• Coordinates
  • Lat. (^o): 31.5168
  • Long. (^o): -159.046
  • Depth (m): 115

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012548	Metatranscriptome	279	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193057_1045391	F012548	N/A	LSPFQIEKFSYFYGFFDANGDGHVDMDDINGITERLRNVAGWSKDDPQFLSLMDNNRVFMECMLDQVKKEKDTEGLEHRSWEEALAPSKMAVTHCSRSAWLHMWARLCQGSAGIDDFPIWVQLLPRALFNIMVAREGASVISKTALRNFYERFTGLSGKELDKVTEEGFRTASANGDYELDFDSYKLLFSNFLLGKTIYGPGKYLFGCFDNRDMDETYKVVYDNV