Scaffold Ga0066669_10314976

Overview

Basic Information

• Taxon OID: 3300018482
• Scaffold ID: Ga0066669_10314976
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1279
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001935	Metagenome / Metatranscriptome	615	Y
F012223	Metagenome / Metatranscriptome	282	Y
F019913	Metagenome / Metatranscriptome	227	Y
F090360	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066669_103149761	F001935	GAG	VWIRHLSSLQFLTYVAFFAIVIASIVTIVPGRAPPLRRESYPDDELGRHDRKLAKYFVAGGGFLVLGALHMILKNLPWTAEWLARSGYAGHLVRDLSNTHVM
Ga0066669_103149763	F090360	N/A	MIAAPPFAAYSTMTEAVVPSAEWPYVYASLQAFKAHVQEYPGCQRLEVFVFVEDDVGIRVHCYSTWDTLDQLEAFLERGYTFERMLADTADGAVERSLVMEKLF
Ga0066669_103149764	F019913	AGGAGG	MAMPNGDSPQKAQEYYQYLLAHHETEHRVQTWHVDWLSLAWLWGFVAALALVLLLWVRQYRTTRQKGIYLVDTWSGFTSELAGPATRFFLLLTAILVGFAIALIVGHLVNGQIF
Ga0066669_103149765	F012223	N/A	VAFLAAWKAGLFHDLERQGAIPLLVEEEDYYTPEWALEEEEWADGDAER