Scaffold Ga0066669_10009822

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066669_10009822

Scaffold Ga0066669_10009822

Overview

Basic Information
Taxon OID	3300018482 Open in IMG/M
Scaffold ID	Ga0066669_10009822 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4801
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000609	Metagenome / Metatranscriptome	990	Y
F024823	Metagenome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066669_100098221	F024823	AGGAG	MAQPTIRRWIAAIGSFGVYAVPLVGPHAAWFLGESLLQGFGSNPQIAWMVTNVAVAIAVQVLAGVVLYWSLGGGWVRKMAWLGVVPLTAALNVAYMSAIPAFFLIEADTAAERNPWTEHCFVRGAELRPIRTPVTQASPSPRAWWAALPPDGRDTLLRVPDCSLTDAVIPKAGQSPEGYLDFFTSFQFASPEGAAIIEQTDRRTSVRTWLMLVDPGAPLQPLAVSSDRYQSPPVLSHRGDAVAYLETVVGSGPPMLHRVQVRKATPESTAREVEVDLAPLGPASYVLMDVDTQTREILVWRDDRPLVVGFDGQSRPVPFEPAEIRAQYSTYLRLGQGWVAWDAYREDGPYQIGWSLSGGSGRHRTNTGRSVTSAAVDPTGRLIAISETTTLSIGHARDVVYVLRTDTGADVFRTYLPRYTRSQVVFFEGGLFGYSNLEGTRILKVPEAQ
Ga0066669_100098229	F000609	GGA	MPNFLSQLTKGEQARLLEELNYMNLEEIRGFCSARGIPYKIMAEYPNGKVKATKDTDRKPIVLARIRRYLTTGQVGRPTCIPAQIVREENPPARLGPRDRVYYRWYAKEFEGVMRLLRDLTAGRFRDGAVARVIAMDFWTRGEAPMFEEFARSWTKAKAEEHQLLTPEYAYLTDLKHHRADGDWKDLRKAKAKSALETLARIAPGRAGEGRLSR

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