Scaffold Ga0190271_10133016

Overview

Basic Information

• Taxon OID: 3300018481
• Scaffold ID: Ga0190271_10133016
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2366
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 41.109
  • Long. (^o): -111.7531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006538	Metagenome	370	Y
F041055	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190271_101330162	F041055	AGGAG	MDEARITRPSPPSTRTIVADEAFCKQVAVHLLCDRAPIHDAFIGEPAEEVLEMVRWALSHQDDERFDPAKVLTAWAKKRGRGVWSGRPRRPQRHSEGDLTWALASFWAEHPRELAQLLERVQARVNANGRS
Ga0190271_101330165	F006538	AGGAG	MSCELCGGGDMWIKTCRTPEGSRLLVCDVCYEEHVSVLVIVPGDRVVVARCDYCWRYGNPREFVEVRPGGRKNAYAGTCAECADEEES