Scaffold Ga0190274_10249525

Overview

Basic Information

• Taxon OID: 3300018476
• Scaffold ID: Ga0190274_10249525
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1608
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Montana
• Coordinates
  • Lat. (^o): 45.6356
  • Long. (^o): -110.571

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052026	Metagenome / Metatranscriptome	143	N
F085877	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190274_102495253	F052026	AGGAGG	MSTMAIGLERDQLRLVGSRPGTAGKGPRMGAAGRICEVSRCRTVLSRYNDAELCWQHEPRHEYLSAVRGRRPAEVEVLNDLVPKNDLVPTAF
Ga0190274_102495256	F085877	GGAGG	VAPPGSSPTDLRDRERNRVSRLLKPHAPPDWERRFRATELLDAVIDGEPIQMFVMAADIR