Scaffold Ga0190274_10005837

Overview

Basic Information

• Taxon OID: 3300018476
• Scaffold ID: Ga0190274_10005837
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7420
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Montana
• Coordinates
  • Lat. (^o): 45.6356
  • Long. (^o): -110.571

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028841	Metagenome	190	Y
F044569	Metagenome	154	Y
F049717	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190274_1000583714	F028841	N/A	VMSDLQAIAAKLEQAMAQLRLIRFGEISAVGYGQVLDARCLLAEALGRLDSVRKQQAA
Ga0190274_100058374	F049717	N/A	MTRRRLMQRLDREDILALAVCETLMEQHASLDETLRVAGTLIGWTLHQTHDTLDAKLETLTSVARDIRHLLLKNHGARRERED
Ga0190274_100058375	F044569	N/A	MGHAVSGKTEDEHDPATIWTGWIKRGELPGTIIGQLVDHWGWVVTLAGAVDPEGGGYQLLGRLGPVPEPLRVEAIDDGPDKDG