NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190270_11402013

Scaffold Ga0190270_11402013


Overview

Basic Information
Taxon OID3300018469 Open in IMG/M
Scaffold IDGa0190270_11402013 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)745
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)41.136Long. (o)-111.9047Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006957Metagenome / Metatranscriptome361Y
F011516Metagenome / Metatranscriptome290Y

Sequences

Protein IDFamilyRBSSequence
Ga0190270_114020131F006957N/APVKLFPGERSYLQAIARLDSTIKSNKKAMRPSLQVEYERNLAVVDRAIAATRTAAKSNPTDPDAADFMFAAYQSKVDLLNTVADARVGGGRGH
Ga0190270_114020132F011516N/AMKLFVVSAVAGLIISLAGSTPAHEEKKKGKTGEKIERSIPVDAQATVTLCVASGTLKVRGWDKSEIRVRSLDISQIEFRRIDKDPSKPASRVDVMVLDKHTTANPKRDCQALASVEMEVPAGATVQIQTRDGDITIAGVAGAYAGS

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