Basic Information | |
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Taxon OID | 3300018469 Open in IMG/M |
Scaffold ID | Ga0190270_10000008 Open in IMG/M |
Source Dataset Name | Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 204149 |
Total Scaffold Genes | 183 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 118 (64.48%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Utah | |||||||
Coordinates | Lat. (o) | 41.136 | Long. (o) | -111.9047 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F026702 | Metagenome / Metatranscriptome | 197 | Y |
F041974 | Metagenome / Metatranscriptome | 159 | Y |
F081525 | Metagenome | 114 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0190270_10000008147 | F081525 | N/A | MRLTSLLVVCLLAAETASAACVNRFVNRTARPYQVVTLLTGKLTFQEAQELAAKISKNQAPPLEWVSDSGKTIAKQYGELKVMRPMPVGCDGKSSGVVMIATFPSAQSPSKKMFVKLDADTVVEFEQQP |
Ga0190270_1000000838 | F026702 | AGGCGG | MNFDLATITYPDGRIAKVTPPEFYAIPLGERIQLLTASRIKFEKDKQLMSPLLALKKQP |
Ga0190270_1000000851 | F041974 | GGA | MTGMFIGLMALFIGFAVLMAVWGRWRRQMGGGFGPTERADGSMTTGPTGYPEEMKGHGKVIGPTDNNAAKM |
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