Scaffold Ga0066662_10915993

Overview

Basic Information

• Taxon OID: 3300018468
• Scaffold ID: Ga0066662_10915993
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 862
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025876	Metagenome / Metatranscriptome	200	Y
F080608	Metagenome	115	Y
F098278	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066662_109159932	F098278	N/A	LPERVRLVAAPGGLRGRELAVLGWTTDDDLGEVALLCRLVDGSAGEIPARWTDLPVRVEPQRPVGGVGSPAAWRLLLARGERLASRRSDAAGEARS
Ga0066662_109159933	F025876	GGAGG	MTGGSWWVLSALDARVLRATDARYERSPERVGELAGCAADVALSALRRLRVAYLVQDDGRRPQRWLRTHRGDVALEHAP
Ga0066662_109159934	F080608	GGAGG	VPGQLALVIETETVVPAAGWETLPPEHQLQVALRLARLLARVG