Scaffold Ga0066662_10388680

Overview

Basic Information

• Taxon OID: 3300018468
• Scaffold ID: Ga0066662_10388680
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1220
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003695	Metagenome / Metatranscriptome	473	Y
F014463	Metagenome / Metatranscriptome	263	Y
F029835	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066662_103886801	F014463	GGAGG	MGNVYVPAAPEKNLGPPGQSSVCGEDLIYISICSGGAIIKISAAERPNFVPGQLIIFGVAVFVLTLVELTVW
Ga0066662_103886802	F003695	AGGAGG	MAQKTDSLAFRFAVVLALAVIVLLVTTWAAPPHPANDTANPRSDAIYRAQHLNLF
Ga0066662_103886803	F029835	GGGGG	MNNLSQPPQPAEPDMALLFLGSFFENLHHAPVRDDAKLDALAMQILDEGPKTLLGLVIRAGAEKWLRRHLWTLAFDSLSPLEQGVCVVIDSAMRYRLRPVSPSLFCG