NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066662_10078028

Scaffold Ga0066662_10078028


Overview

Basic Information
Taxon OID3300018468 Open in IMG/M
Scaffold IDGa0066662_10078028 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2251
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025546Metagenome201Y
F052107Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0066662_100780281F052107GGAGMHAVKKQSGQVMVIVAVWLIALIGSAALILLTGSVEWQRNQSQQLADQAALDAALKIGVGCTAGSASTVITEADNFVATQRTRTGALTIGAGTCSGGYAGTDTFAGGLSETIHYPYRGHQQQVEVILTVSLPISFGSYMGASNTNVTRRAVAQQLNGDMPAVSATSLACTGGQFNVGGSVAAANAITLSGGCAIYAHQRLDAASSTYSGLGDTSVYANGQSWVGGGGLCVAGANTGSTNSVCADGYEVS
Ga0066662_100780284F025546N/AERAECLVVVVPPEIAAMTDARRSLAIFRDIMNVPDNRMEMVLNLRSPHPPLDRAAVESILGRKMAVVVGFDDSRPEDSTLAGGLVLQHDPSSMVSRGAADISRVILSSLQLDV

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