Scaffold Ga0066662

Basic Information
Taxon OID	3300018468 Open in IMG/M
Scaffold ID	Ga0066662_10000342 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300018468 Open in IMG/M

Scaffold ID

Ga0066662_10000342 Open in IMG/M

Source Dataset Name

Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	20628
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (62.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

20628

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (62.50%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California: Angelo Coastal Reserve

Coordinates

Lat. (^o)

39.7392

Long. (^o)

-123.6308

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F052159	Metagenome / Metatranscriptome	143	Y
F053581	Metagenome / Metatranscriptome	141	N
F071495	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066662_1000034210	F071495	GGA	MTWVDPAEELSTIHRWFGERGLELELFQRGDGRWRGMVSVAGESRGTGEYVEGDDELDAARAAQRRHSSRQLRAALDGLSQVAQSEVVQLLAAEVMLARIPGGRSRLGRQAALATAVWMLDPKRRAATRTVGKVATDWARLRMGNGSGGAGELPRARAQEMLPAALGATERGLDALRLRLQQKR
Ga0066662_100003425	F053581	GGA	VATAIFEQMDDHVIFEYERCPLRDRAHAVARVLPFVRPLAGLVWPAARRADRVQLSEDGILARSLSGYARIPWDEVGAVHRSRTTWGRMTVHVVAANPSRQIEITESMPAFDDLVATILHNAGQGEVVHLRAA
Ga0066662_100003428	F052159	GGGGG	MKHRFAVLFAVLAAGAGLALPTAASASNGGQGACIAHHPAYVEGVFEPLYSAGCSGHDEPELDPLSNQPGSGKNATWTFTLPQNGSHFGVDAVGPTFWFGGPVTDPDSLFRQAFLEVQFYPNSVVNNCMPNGGYGVKYVPGAYSVCTPVWSLTTTGQKPNYHEPAAFNAMLTRNGSGQPLVMHQGDRISVRMFVTSAKDGWHIAVTDESTGESGTIVLDSASGPLMPAYSVAKIGNSLPWGAVHDAPIAFVWEIGHTSPFTSPAAQFCWPGEVGCYSYDAPAWRDQSPPIHIDSVTFNDGTRPTGWAVVSDYGGKAEITDPTETGSTCSGYGGPFCIYPWFTQNHDGSFSYGVNYPTTADDFGKANQFQQQLNCGGPFGPNSTYCATRIR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066662_10000342

Overview

Ecosystem & Geography

Associated Families

Sequences