NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190268_11361714

Scaffold Ga0190268_11361714


Overview

Basic Information
Taxon OID3300018466 Open in IMG/M
Scaffold IDGa0190268_11361714 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Arizona
CoordinatesLat. (o)33.5944Long. (o)-109.1397Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013869Metagenome / Metatranscriptome267Y
F016640Metagenome / Metatranscriptome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0190268_113617141F013869GGAGGMTIATVLAVYKTAPLVLVVESAEGAVCELSLADLHGAGHQLSDDACTSLVEDYQLF
Ga0190268_113617142F016640GGAGMISLLIVVVVLACASWMAWSRWQYWRTPMSPLPSEDRSPKARAFEAFLHGNTSLAAGQWADATAAFEQARTLDPKRPYVAERLAEVARRQHAASAPVPVAAGG

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