Scaffold Ga0190269_10493157

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0190269_10493157

Scaffold Ga0190269_10493157

Overview

Basic Information
Taxon OID	3300018465 Open in IMG/M
Scaffold ID	Ga0190269_10493157 Open in IMG/M
Source Dataset Name	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	793
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location Name	USA: Arizona
Coordinates	Lat. (^o)	33.5944	Long. (^o)	-109.1397	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020551	Metagenome / Metatranscriptome	223	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190269_104931572	F020551	AGGAG	VISLQSMGSLSEILFVAAAIIGLVSSRIFLFNTGEGGVNASALRRSLGLVSMVLTYSLFAWGFVSLGWYWPLAAYLVAALVAAIVVTFSPWRLLYSYRPALDFAAIAAGCYLWIEHWPFM

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