Scaffold Ga0190269_10254388

Overview

Basic Information

• Taxon OID: 3300018465
• Scaffold ID: Ga0190269_10254388
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 992
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Arizona
• Coordinates
  • Lat. (^o): 33.5944
  • Long. (^o): -109.1397

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070770	Metagenome	122	N
F104098	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190269_102543882	F070770	GGAGG	MAKKRAGGQSAPEAWIGRDVVIGVGASGARVSGELREVSDRGVVLHYGAEQHGRDPGHVFYPWSNVQAIQLPDEEQPADEEQPTGSGE
Ga0190269_102543883	F104098	AGGAGG	MQTMHWYNPVTKEDEDVPAPMNDEQAIGMLSGHSDSDRFIEEYRRRSATHPDTIDALTLTGETFYWEHRRGQPPG