Scaffold Ga0190269_10182178

Overview

Basic Information

• Taxon OID: 3300018465
• Scaffold ID: Ga0190269_10182178
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1119
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Arizona
• Coordinates
  • Lat. (^o): 33.5944
  • Long. (^o): -109.1397

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043275	Metagenome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190269_101821781	F043275	N/A	MKAVPIFLFVILSLSFIVIAPLSIGSSYALKDEDGVYGIVTIDNVKGKSLEVTAYIYDEDKSKRIKGSPGPIDETATQVKHTFKFDNDDLPQDVGPGTQWIACIEFKNGNGEPSCWTDTFNSESQPDRITLDADYIRD