NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066667_10001905

Scaffold Ga0066667_10001905


Overview

Basic Information
Taxon OID3300018433 Open in IMG/M
Scaffold IDGa0066667_10001905 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8095
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014967Metagenome / Metatranscriptome258N
F026237Metagenome198N

Sequences

Protein IDFamilyRBSSequence
Ga0066667_100019058F014967GGTGGVPLKVKPVKLRDSLYLLIPVDIARLLGVAASSHFQLSLNENQESVRLVYEMRKDEPPKEVVTKDE
Ga0066667_100019059F026237N/AMALLFTIRAKKTYFLDSVFFIIAANVGFILFLSDITFSDLINRPPNPYLDTIFIAMTAISIGFASYLLKESGGKGGFTEFTTFLKMLPRPLLAFLLISIVWATGTLIWRPFTVNNLMTNGESIFYFSYDGWYILVSSLLLASFIAFPVLAFYRQSKRVQDPKASSSIRLISICWASFGLITFFQEAFAGAFASLVKSFSIVADGTLFVLVSFALREPTILSRIVTGGEMIFQAVSSSTEEDTVVLYNSESDRKRLVERFVEDGLATRQELVFYAIKSEVPFYRAILKGTTTDSSRQKSPQMMIQSIDFGSGEALTDLVVPPGFHRTKRELVDLGELSLDQCNLIISKVKSLDSLPGPRRRPRIWALNVEEAQSGTLEALREANPKARVRDLALQQDSFSKLLNTKHQALSKSRILLEYDPTSNYEDAIQKFAREFQANVEPIAIFTSMGSPTFRQFRGQHNLRLFTFSAKTSTPSKVSEEHVLLPERDTSLLLDAVDKLLQANHGRLVGMVFDVFTDLILFQGFEKGYGVLSSVVEMSESESASTLVLINFTALDERSLNGIRGLFRSQAKYDLGGLRMVRSESTGFSSFENKKPTFEDESHGSEGRLSN
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Institute for Fundamental Biomedical Research
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