Scaffold Ga0190275_10038821

Overview

Basic Information

• Taxon OID: 3300018432
• Scaffold ID: Ga0190275_10038821
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3893
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter xylanophilus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Montana
• Coordinates
  • Lat. (^o): 45.2639
  • Long. (^o): -110.8632

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012065	Metagenome	284	Y
F020089	Metagenome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190275_100388211	F012065	AGGAGG	VTDDFDKDLRRILLRLIEVRDDRNDADKRLQEFRAANNPPERPDEFEGVDALLDYHHRRQGYENPLKQHERALKKANKEYTDAADQVRLFLPDGVPLRYAYEGERSGLIGTEYVIARKQGEIVIESPSTATG
Ga0190275_100388212	F020089	N/A	MEYRDHFEWTPRSEAWVEAASWIAEEKRARLREDPEEEAFARLAFQLCMQQAAEPDAD