Scaffold Ga0066655_10331965

Overview

Basic Information

• Taxon OID: 3300018431
• Scaffold ID: Ga0066655_10331965
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 995
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000242	Metagenome / Metatranscriptome	1480	Y
F000257	Metagenome / Metatranscriptome	1447	Y
F011973	Metagenome / Metatranscriptome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066655_103319651	F011973	N/A	DMALQPHRLEFKPHRFEFIFGMVLAMAVTILAITTWAAPSNPDNDSAAPILPIYRSQHWN
Ga0066655_103319652	F000242	GGAGG	MCWEIDYKFFAEQRKAQETRIKQEQRAGVINQLLNEANQQGEKTNVETTPVKEVAPAK
Ga0066655_103319653	F000257	AGCAGG	MTRRKREIVGLTNERDFPHLVELALPPGGFRSVFLEIDAFHRDRRIPVRRGRSRHEAERFFIRFCFPDAATADAFRNRFGGECLTHAPVQP