Scaffold Ga0190272_10317081

Overview

Basic Information

• Taxon OID: 3300018429
• Scaffold ID: Ga0190272_10317081
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1219
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas communis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.4668
  • Long. (^o): -109.6253

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017105	Metagenome / Metatranscriptome	242	Y
F029804	Metagenome / Metatranscriptome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0190272_103170812	F029804	N/A	MQFARVYYSKSGSLTNVKAADLFFAEGKPLAVFTWQRNGGRRVPLDCVELDPAKLRSASSNGTIYRYEGDVPS
Ga0190272_103170813	F017105	N/A	MRSLLTLGAFAGFACGARHFLNFMNQKNKNRLQEKRLEIWEGEGGAVPVAQTKTAAQVRPKKRPQASPRDVT