Scaffold Ga0181566

Basic Information
Taxon OID	3300018426 Open in IMG/M
Scaffold ID	Ga0181566_10074725 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2596
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

2596

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Bacteriovoracaceae → Bacteriovorax → unclassified Bacteriovorax → Bacteriovorax sp. MedPE-SWde	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Bacteriovoracaceae → Bacteriovorax → unclassified Bacteriovorax → Bacteriovorax sp. MedPE-SWde

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052547	Metagenome / Metatranscriptome	142	N
F072012	Metagenome / Metatranscriptome	121	Y
F080057	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181566_100747251	F072012	N/A	HKSSIILKTLDSFNDYFNKLIKGSTLNNIMVDHSHAGMNYTVLNYKKGEWYISPFMYENMAIYDSIFKINSFDDVVNINESQIQRAKNTECENCPLFFSCYHRKIILLRDYLGVDRCIAPKENMINNIHNYNEAAQVMYDWDGYSVEKDKKGYRKKFLITKDGDKRLKELKNISYVK
Ga0181566_100747252	F080057	N/A	MLNDSWEKIVKHGGQGEEFTSVSSMGQYKIQVILELLEGCSYNCPGCFVKRKGNWNPQSIDIFYNLAKELKDNNNIVLDDIVIGPTDFYGAQNLTDIINNEKLVQAISWMPEDNRNVQHNCSIDGSLNEKDIQGKLKLIEESLLGKTVKAWDVQIALDLNKVLDDKDYRKALDERVETFANSNLEFEISMATNIVDNISVERIYEANNYIRNKYSTVIEILPSVVRSFDNGNKHGNKLFEWNDLLNDIAKDVDYFKNNIHFLQGDLSHKAFHYSVIGIHNGNVYMSPFIYENAAIYNDDFKIEINNSIHKSILNYKNYVVNEQIENSHNKECITCKYLNICSNRLIPKVMDNIFNNRKECILNKQVIELFDNEYYNANSY
Ga0181566_100747253	F052547	GAG	MPIVTDNLKHSQADKDFNLSFDKGHEIKVQFNCEVLSGCEFKCKGCFVNKVGSNMGSYDRLNKAIDLFNDNGFRVSTINIGPTDLFGNNNIVSLLKDETFRECLSKVTTIQFVTTLEKVDDKVIDLLNSIPKKDGFMYDANIALQLPVDWDKIESKLNLLNKFKDDLNYYMVYNMGNDDEYNSQVLEMAKLVKERFNSLLTLNPSFFRSPKSKLQKHLINKWKQYDFSDDLYPKTIIDQAQGGSLELNYTYCNERFFWTPFIYDIALIGTSEFEVKNESDINSWTEIKTDQFMEQLVYAQETKNCGNCHNQMTCI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181566_10074725

Overview

Ecosystem & Geography

Associated Families

Sequences