Basic Information | |
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Taxon OID | 3300018426 Open in IMG/M |
Scaffold ID | Ga0181566_10074725 Open in IMG/M |
Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2596 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Bacteriovoracaceae → Bacteriovorax → unclassified Bacteriovorax → Bacteriovorax sp. MedPE-SWde | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F052547 | Metagenome / Metatranscriptome | 142 | N |
F072012 | Metagenome / Metatranscriptome | 121 | Y |
F080057 | Metagenome / Metatranscriptome | 115 | N |
Protein ID | Family | RBS | Sequence |
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Ga0181566_100747251 | F072012 | N/A | HKSSIILKTLDSFNDYFNKLIKGSTLNNIMVDHSHAGMNYTVLNYKKGEWYISPFMYENMAIYDSIFKINSFDDVVNINESQIQRAKNTECENCPLFFSCYHRKIILLRDYLGVDRCIAPKENMINNIHNYNEAAQVMYDWDGYSVEKDKKGYRKKFLITKDGDKRLKELKNISYVK |
Ga0181566_100747252 | F080057 | N/A | MLNDSWEKIVKHGGQGEEFTSVSSMGQYKIQVILELLEGCSYNCPGCFVKRKGNWNPQSIDIFYNLAKELKDNNNIVLDDIVIGPTDFYGAQNLTDIINNEKLVQAISWMPEDNRNVQHNCSIDGSLNEKDIQGKLKLIEESLLGKTVKAWDVQIALDLNKVLDDKDYRKALDERVETFANSNLEFEISMATNIVDNISVERIYEANNYIRNKYSTVIEILPSVVRSFDNGNKHGNKLFEWNDLLNDIAKDVDYFKNNIHFLQGDLSHKAFHYSVIGIHNGNVYMSPFIYENAAIYNDDFKIEINNSIHKSILNYKNYVVNEQIENSHNKECITCKYLNICSNRLIPKVMDNIFNNRKECILNKQVIELFDNEYYNANSY |
Ga0181566_100747253 | F052547 | GAG | MPIVTDNLKHSQADKDFNLSFDKGHEIKVQFNCEVLSGCEFKCKGCFVNKVGSNMGSYDRLNKAIDLFNDNGFRVSTINIGPTDLFGNNNIVSLLKDETFRECLSKVTTIQFVTTLEKVDDKVIDLLNSIPKKDGFMYDANIALQLPVDWDKIESKLNLLNKFKDDLNYYMVYNMGNDDEYNSQVLEMAKLVKERFNSLLTLNPSFFRSPKSKLQKHLINKWKQYDFSDDLYPKTIIDQAQGGSLELNYTYCNERFFWTPFIYDIALIGTSEFEVKNESDINSWTEIKTDQFMEQLVYAQETKNCGNCHNQMTCI |
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