Scaffold Ga0181593_10280019

Overview

Basic Information

• Taxon OID: 3300018423
• Scaffold ID: Ga0181593_10280019
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071413AT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1281
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003326	Metagenome / Metatranscriptome	494	Y
F013960	Metagenome / Metatranscriptome	267	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181593_102800191	F003326	N/A	HTASQTISETSCMATLKEKKKLIRTIKNPIRYFRLNFSKYGGEVAMGTITKDQYEYWTDNDGFEEYMAQVDFDADDANKEIPKRAQFDQPFYEYSNICHLSGPEWADSQTLYVEELNKDGEPMEDGDGGYVKDIQHEYGDLESLGAEIICEETHNTGSKSCENEYYVFGQYFNKGGWHTPDIIKTGPDGLEIDKLKIRYTDADGFKVFNEIEYDGEVYYLEEDSTGKSSSFYVAKGDNLK
Ga0181593_102800192	F013960	AGGAG	MYKRDDYYNSRVSPLELQEYIDEAYPGEMGLVRSLMRHCVREMIVRTRHEVDIANSELWSLNDWPEEEGFGSSDRAHYIRRIIETTDFDRKFLQAEQELITINRLTECPKNDTVRQYMKMNDKLKEGMVA