Scaffold Ga0190265_10886085

Overview

Basic Information

• Taxon OID: 3300018422
• Scaffold ID: Ga0190265_10886085
• Source Dataset Name: Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1015
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location

• Location Name: USA: Utah
• Coordinates
  • Lat. (^o): 37.9813
  • Long. (^o): -109.5168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013143	Metagenome / Metatranscriptome	274	Y
F051769	Metagenome / Metatranscriptome	143	Y
F095084	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0190265_108860851	F013143	AGGAG	MLSRFMLGAIVGGIAVYMWGDEIRRFANTKSRTARLVAADTLKSVQSTAEDIFDTAKDQVTSTLQSGQDAIRPARAPRERG
Ga0190265_108860852	F095084	GGAGG	MSGMPALYCRTCNTFREVEDWRERGEALVIELGPCGHEIRRSAGVEWPIHTVAA
Ga0190265_108860853	F051769	GGA	MKACAASGRIAAAVALAMGGLGLGLLLLGSRRANPLPVARCPIHGIAYDAELEVCPDCAKTDAAGGKGGTR