NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190265_10242642

Scaffold Ga0190265_10242642


Overview

Basic Information
Taxon OID3300018422 Open in IMG/M
Scaffold IDGa0190265_10242642 Open in IMG/M
Source Dataset NamePopulus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1844
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Populus Soil Microbial Communities From Riparian Zone Of Different River Systems In The Western United States

Source Dataset Sampling Location
Location NameUSA: Utah
CoordinatesLat. (o)37.9813Long. (o)-109.5168Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070770Metagenome122N
F104098Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0190265_102426423F070770GGAGGMAKKRAGGKLAPEAWIGRDVVIGVGASGARVGGELREVSDRGVVLHYGAEQHGRDPGHVFYPWSNVQAIQLPDEEQPADEEQPSGSGE
Ga0190265_102426424F104098AGGAGGMQTIHWYNPVTKEEEDVPAPMNDEQAIGMLSGHPDSDRFIEEYRRRSATHPDTIDALTLTGETFYWEHRRGQPPG

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