Scaffold Ga0181563_10025268

Overview

Basic Information

• Taxon OID: 3300018420
• Scaffold ID: Ga0181563_10025268
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4549
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F053980	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181563_100252681	F053980	N/A	GYELLAQFEKEIKECFTVPNHWLPLDFQDQRTDSVSLADIERKCDERDRCTLSSFEEESIERAKRVQAYTTQLERNGVIEYIPR
Ga0181563_100252689	F000325	AGGAG	MKTAKGNDKLGKENCIVVSRPVGDTCPPTCDFLGNGCYAEQLEKMYPGVRPAGMQNLITEKNKIRAMLVNAEKKGNDLRWHERGDFFKNGSELDNEYVDNIIWACESILNEGGKLPKMWAYTHIYDTRLSMELGKYITMYASIHNEDDWAVAKAAGFKLFAWCDSGENIAPKRPRSKKKADEWRSNLPKMKIIGQEKYITCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH