Scaffold Ga0181558

Basic Information
Taxon OID	3300018417 Open in IMG/M
Scaffold ID	Ga0181558_10038651 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3323
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

3323

Total Scaffold Genes

2 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Novel Protein Genes

1 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F082550	Metagenome	113	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0181558_100386512	F082550	GGAG	MALLSVANVDEYRKEYAEELAAQEEKLGAPISNELITEKIYGVISQKADVDYFSFYKAFNPDGKYSNIDSFRETLKDKDLNETEIINKAYGELQNTGKVRFKDFVNTFAPKEEDLNEAVKRDFNIIGLNIPDAEYSVKEIAEMRGVNPDTDVGLAEVGFAQSLARNDANEVLASKKVLSDYFGQEIPLRYGPETEELEFLNPQTGEYELLNKPGIDAGDVAKFGSTAAVIVPEIVATIFATGATGPTGGVITSAATSAALETARLALGHQLYGINQTEKGFTDYLKNEGKDMAVLNGALTTAGFTVPKLYRMIKQFRNMGKINASDFGGTIKNAEQAQELIKKINDRLVTLGTKKKLKFTLGQAGDDAELLALQNAYESNPKYGVKGIFDSFNKEQAEALDTFFLLASDPYNYKGISGKDNILSDELGKKIQNVILQRLEPRQKILTKALEAAETDLTEAVIKLPGGSQKEAGQSIRGVIDTLYQDFDKLYDDKYTTLFAAGKGRKVGTDIIKEAVKGLNKRQKETLFKKYPDIKTFFNAPKGKTVSVNTLKNTLSDLRKFDRSIKKGVLPVEGEPVEGAVSKLIGSIKDQFKKSLGQDDVWYKQFRTLDQEYATNKKLYRGTIGKLLQSKDGVLKIADEDVFAQTFKKGAGQEMRIDQIYDLLKRKPEFIQTYKDSILKSYKTFVDPADTGKINLVKHQKFLNDYKYALETFFGKKGYKEITKVGNLAKKVNETSLKRDKIMKQLGTTTKGKLENMDPDKIFSYLYNNKSPTTLNKVMTIIRQDDNLLKAFQTVAKDDLMFKATNNRGQFVFDKFADYMKNNKQILERTFADNPQYVKDLSLFRDALEITTRKSTQKTISKAETALNDIIRARLGQFTVAGRTFTALKKIFRSDIDRQLAEIMTDP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181558_10038651

Overview

Ecosystem & Geography

Associated Families

Sequences