Scaffold Ga0181553_10138954

Overview

Basic Information

• Taxon OID: 3300018416
• Scaffold ID: Ga0181553_10138954
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1458
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012529	Metagenome / Metatranscriptome	280	Y
F032993	Metagenome / Metatranscriptome	178	Y
F051059	Metagenome / Metatranscriptome	144	N
F087896	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181553_101389541	F032993	GGAG	MKTRKIIGSLPNMEVPQLPVSLLSHMEAMGLLPVSHEDDGVDNIDVPWRSNTNYFRRDVLDERGEPLF
Ga0181553_101389542	F051059	AGGAG	MYYALDIYSKATKKMLAYHSSDSRKDILHLKKMYAKNNFVYIKECFGETDEDKKNYRQSTKYGSTSVAS
Ga0181553_101389543	F012529	AGGAGG	MLEDKTYKIKVWDHHDAVIYVYARHTEQLNPEEEDVNKRRWKHWKEIVAVIPVHNGSDDYQDTSGSFQNDVKVTVDALAELYSSSPDYEMGVEYVMNTHQYINV
Ga0181553_101389547	F087896	N/A	YKTKQGAIISDDGYTQEIKQHNLGYGWEATLWDNDRLVITHDATGETLSIPPESTQKLRDIFAAIKQETDNG