Basic Information | |
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Taxon OID | 3300018416 Open in IMG/M |
Scaffold ID | Ga0181553_10121747 Open in IMG/M |
Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1584 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F025412 | Metagenome | 202 | Y |
F027524 | Metagenome | 194 | N |
F103288 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181553_101217472 | F027524 | N/A | VNEEFIKEKRQVIETACKNICKHSDIWQDLAQEVNIYFLTNELPSNLNKIDGFIFVVAYKMFHLSGSEFNRLHFDNVLRESTELDYLKLKDIPYISNNVYKEYLEQVKQLDEMERIWVEEIVKRNLSIKLFSDHTGIHRATAKERMESIYNKLRKQNK |
Ga0181553_101217473 | F103288 | N/A | MSIIIISILAILGWTSLFKQTFSTKEGFKYVYEPISKILYTLDFKPLSCAYCLSFWTGLTFTIAFMDLSFMVIFLYFAKQD |
Ga0181553_101217474 | F025412 | N/A | MDYRELKWGALKSYATKLGINTKGMTKEVLLEWLDAMPDVAHGIEELKPFKGIKQHHPLFDEIKDYLPYLKAYKKLNAVSRDPKINKAIATLFVKYIETQKNAKVNIGCGRCVNSYYQRMVANYNKLVDEYGGDKI |
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