NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0181561_10113823

Scaffold Ga0181561_10113823


Overview

Basic Information
Taxon OID3300018410 Open in IMG/M
Scaffold IDGa0181561_10113823 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011510BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1450
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010466Metagenome / Metatranscriptome303N
F040112Metagenome / Metatranscriptome162N
F063692Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0181561_101138231F010466N/ASAELEAGYDLAQEMLQWEELNPTQKAESDRYLKSMNYAFGFNGPDIEEVYHLLSDVDGAIPTMIEDSYDGRRKTWRATSVFVSLALHSEGEKRMFYLDLANHISKGSDSYKTYAAVLLLEYIESIGSGAVEMRRIMLLAYVQAYEEEIGIEFAERIYALLVEK
Ga0181561_101138232F063692AGTAGMKKLVAVVFVLITLVVMVLFSRAQDREQQLVNDRYKAACDFYFSGVVVDVANDFDVHRCMLRLELDTSTIANFDVRDTTAYYHAVIDGTDAEVIESIIYDHSESGQANFIKPGMRYTFDGQVDSAYLIFADTLVESWPIQISTFELMDVARFHQIPMAEGKTAVQRKRGWWPRVR
Ga0181561_101138233F040112GGTGGMRKVGTSLIILLLFLLGSCAHEPLVGEVLDIAEIQSELEWVTLKSGKEEGFLEPLMKFEVYRTTEQSFKQIQDHLSGHLKRIEPGYYLNNEFDDFLRENGLRVLNVNSSMISSNPFDDHYRVYFLSDSQTIAVLWINSN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.