Scaffold Ga0187912_1049644

Overview

Basic Information

• Taxon OID: 3300018409
• Scaffold ID: Ga0187912_1049644
• Source Dataset Name: Goat fecal pellet fungal communities from Santa Barbara, California, USA ? diluted pellet 3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 938
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium grantii → Clostridium grantii DSM 8605 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 34.4204
  • Long. (^o): -119.6671
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011633	Metagenome	288	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187912_10496442	F011633	GAGG	MVKEEVWSIVPERAEAFFQSQPDVVREGKGRYRFGSCAITLTEMKPKGMGIWAAKRIRVRMEGEEAHVADIYHRFFLQFLSTGG