NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187771_10257240

Scaffold Ga0187771_10257240


Overview

Basic Information
Taxon OID3300018088 Open in IMG/M
Scaffold IDGa0187771_10257240 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1457
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002560Metagenome / Metatranscriptome548Y
F007596Metagenome348Y

Sequences

Protein IDFamilyRBSSequence
Ga0187771_102572402F002560GGAGGMIEYDPPRSADSPRPPVIPLPVALYVSDELIFELYDGGQPCRRFSIRWERLVPAKEHVPQPAPQNPQAGLTHQD
Ga0187771_102572404F007596GAGGMSLRVRFRFDGKCSVHPRYDPARDGRPQHGKCEGCESLYVIYLYTAIAKRRAENSNYILARFSSGREAERPTDESSPVSEEETN

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