Scaffold Ga0187769_10002193

Overview

Basic Information

• Taxon OID: 3300018086
• Scaffold ID: Ga0187769_10002193
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11373
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033669	Metagenome / Metatranscriptome	176	Y
F078113	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187769_1000219312	F078113	GGA	MPYYKSAQRLEGSGPGIQFTASRPYWINSYFIPPINAGQPIGLTVLSDRAGSTTVILAYYDEKFQSIVGPPLVDVIFAPDQKGLVTFTRADRSGPYFLTIDSLNSTFTFYITSNWSPFYPLRTLAVYSFGLLPVGAVIAYYDEIAEQREKMVEKALKSIKEPRQ
Ga0187769_100021937	F033669	GGA	VLLVASLPSASAQPCVVESVNYDFPSSATVGQQITVTTHLTATCVEWAPYLTEYSIRVDLTNIPTGFVSTATYQVGYAQTYIDQVFLNTATAPNSQGNWLLRVDVYIWGGDGQLVIHLVDYAKLPVG