Scaffold Ga0187772_10022807

Overview

Basic Information

• Taxon OID: 3300018085
• Scaffold ID: Ga0187772_10022807
• Source Dataset Name: Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3630
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location

• Location Name: Colombia: Department of Meta
• Coordinates
  • Lat. (^o): 4.0627
  • Long. (^o): -73.195
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045224	Metagenome / Metatranscriptome	153	Y
F092540	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187772_100228075	F092540	AGGAGG	MSSTPSTTIITNLKSATLPTANTLKAANAAGIDANGMLALAQIKALELKTCLTLLARATDGADGNLTMINNVLASLT
Ga0187772_100228076	F045224	N/A	MNQNDLLETARAVATARQARPASYTTKDFQLEVLGQLAEVQALTESLQEEFTREMKAKQAESKLLRFDGRTLTAVGAIALSLTGYVLQDARNTSRRDAEIETMKARVVRLEEIAATNTEGRVRMEVQLSELREGQTEIKRLLEAHDMATRKVVGKK