Scaffold Ga0184629_10084613

Overview

Basic Information

• Taxon OID: 3300018084
• Scaffold ID: Ga0184629_10084613
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1524
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039374	Metagenome	164	Y
F100602	Metagenome / Metatranscriptome	102	Y
F101825	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184629_100846131	F101825	N/A	AGNKRPAEFADYCKVGPTRVPFVTFPEAELDKAQKRAAHWMELNKKYRPLVEAARSRSAA
Ga0184629_100846132	F100602	AGGAGG	MGFYAEPWLREARDHIKSVPIHIEGTLAVPGDFDKLADAVEKAIKAALVETSGTIPQQLESQNLVSMCQATGVWDILPPALRGLVQEVSSLRSANTASSQLSRGSSSTIQLQRYFQVARGLIDYMEFHVIGNDSVLKRLKVA
Ga0184629_100846134	F039374	N/A	YQRQDDEGEKIELLSEGESLVPMVQSSGGNEWFMVKTQKGAIGWVKSADVREEKVKK