Scaffold Ga0184628_10000902

Overview

Basic Information

• Taxon OID: 3300018083
• Scaffold ID: Ga0184628_10000902
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15232
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030919	Metagenome / Metatranscriptome	184	Y
F081905	Metagenome	114	Y
F094821	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184628_1000090215	F094821	GGA	VFDSLTVTGLAGAVMYGSREAVVIKSWRITRIKADGGHWMLSARIERVVSAFYARQAPLLFTAPRAGGFWLWPVDAIEIGETSLRAELGPPER
Ga0184628_1000090216	F081905	AGGAG	MAIISGRNGSVMWDPAGTLAVEVLSLNAWVADFKTEFEDVSCFGDANRVYLPGLKDAGGTLGGFFNSAELALFEAAEQDTPGLLKLIPSTTEPTFFWTGPAYLDASIDASLSAPKVSGTWKAAGPFLLDGGVLGADAQAARERRLAGRKPDTTTKRK
Ga0184628_100009029	F030919	N/A	MAAPYPPQGNQTPHTERPLKIYGEQYLAAPAPLPVGVVIDPVGPGGPLFSDGQPRVALPSGWAVVTVTDWVISNRYTGQPIEVISAEEYAERFGPSE