Scaffold Ga0184625_10017081

Overview

Basic Information

• Taxon OID: 3300018081
• Scaffold ID: Ga0184625_10017081
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3424
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010171	Metagenome / Metatranscriptome	307	Y
F060689	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184625_100170812	F010171	AGGAG	MARPGGNHRMLPDQPVASVDPEVERLAHVMVNGLIERLAAEPAVPATSLLDNLGEQLQQAASLRRLNVMRRPGSASAASSPATPRRSAPPAAAGEQPHQQP
Ga0184625_100170813	F060689	N/A	VTPLDRAGPGSTGISPELLQQLTLAILDGSADDGWRTIITIRSYLYTWETFLRDRQELRDHLAAAHKADPASTEADSASLNRQHWKAHASDLARFLNAHPVQG