NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184633_10191784

Scaffold Ga0184633_10191784


Overview

Basic Information
Taxon OID3300018077 Open in IMG/M
Scaffold IDGa0184633_10191784 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1057
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021173Metagenome / Metatranscriptome220N
F064462Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0184633_101917841F021173AGGAGGMATPVIISLLVGLVAGGACMAMWAANRIEEERVRQFDRGFERGRWLTDISVAKAIEDQDRAHRVGLLVAGARQPSGSPTARPPGQEPRPSLLVLP
Ga0184633_101917842F064462AGGAGGMPADLVAIAALAALAALAPLAADWRRRQATRRFDELYERNLLRRTGRG

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