NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0184632_10115506

Scaffold Ga0184632_10115506


Overview

Basic Information
Taxon OID3300018075 Open in IMG/M
Scaffold IDGa0184632_10115506 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1180
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012367Metagenome / Metatranscriptome281N
F057177Metagenome / Metatranscriptome136Y

Sequences

Protein IDFamilyRBSSequence
Ga0184632_101155062F012367GGAGGVITRRELESWLLREGAVRVKRADGHKHFTLRGHHVVVLGHGPQTLSATSLSLVMKQLEQAGYSREKLRREWSGERG
Ga0184632_101155063F057177GGAGGMGDGRWGPALVIGIIALAAADEEYVIWRSSTLNALEWTPGSRAYDSKEACDQAVAVRQGRVAKAVEFLRRIGADDIVLRVVGDRVYECRPALTRPPSRPSRSEPGQSP

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.