NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0184624_10179578

Scaffold Ga0184624_10179578


Overview

Basic Information
Taxon OID3300018073 Open in IMG/M
Scaffold IDGa0184624_10179578 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)940
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9195Long. (o)-106.9496Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044569Metagenome154Y
F049717Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0184624_101795781F049717N/AAGAARVGYSVLGPPYMTRRRVMERLERDDLIALEVYAKLVEHHASLDESVRVAGTIIGWSLHQSDGTLDAKLEGLTVLMRDIRGLLLKNHGARRERED
Ga0184624_101795782F044569GGAGVSEKTEDKPDPTMIWTGWIRKGELPGTVVGELLDNWQWPIAITGYLDKEGGGYVLQGRLGKVPENLRIDAIDDDDKAGLRQDGTV

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