NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187784_10265190

Scaffold Ga0187784_10265190


Overview

Basic Information
Taxon OID3300018062 Open in IMG/M
Scaffold IDGa0187784_10265190 Open in IMG/M
Source Dataset NameTropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1397
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland → Tropical Peatland Microbial Communities From Different Locations

Source Dataset Sampling Location
Location NameColombia: Department of Meta
CoordinatesLat. (o)4.0627Long. (o)-73.195Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013913Metagenome267Y
F025336Metagenome202Y
F054526Metagenome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0187784_102651902F054526AGGAMSNSHEHLSTPALIEQVIGSGLFSFDGEPYFSWQGCEHCADGLGAAVYDLRGCRSLKDRELYEFQVCGDCIIRLYYGRRGTYHA
Ga0187784_102651903F013913GGGGGMNLTPSTKGSFIAGVGLWCLVWALLFKGDEIAKAGGFQRWVSSERCLRWIRNHKSTSLIGTELCNYSHTGLDPLGVTFALGGTLVNVLVIYFLLPMLERAKRGGTALNLQL
Ga0187784_102651904F025336AGGAGGMALIALIAAAEAMLFSASRSKRGQTRRQQVLMGNSLDSVRALPLVDDYLKRKTAGAGRVQVFVASKLTEVCRRAVHTRSFEYLLLHLIRTAILKRRRKLSIAHLGVTL
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