Scaffold Ga0184626_10002105

Overview

Basic Information

• Taxon OID: 3300018053
• Scaffold ID: Ga0184626_10002105
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7222
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045955	Metagenome / Metatranscriptome	152	Y
F047927	Metagenome	149	Y
F072573	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184626_100021051	F047927	AGGA	MEEVHRYRGHTIRFTVQRSPTTLYWRARGTIEYTEGGMFWTFIMTGAIDTFATEAEAKQGFLQQAQKWVDDRLGS
Ga0184626_100021056	F072573	AGGA	MKSSGSTRRMIFGFILAIGVTLTQPYLAFGAGQSFGRSGSVGASRMHGQHPFRGFGFFAEDGLGDQGDQQVIILQQSQPAPTAEPAENRIYVQPRWVDGGYGVQVLEPGYWTVPKQAAEH
Ga0184626_100021057	F045955	AGGA	MQSNNTGGFLRKENSSALRYWPDSVLLVFLIVTVFPAHASNHYTDHQLDALAIRVGKIYWIVAVKNQTPVFLSSPAVNAVSFRPQANESFEIIELVGRQDKNPYYKVKFDSGKEAFIRPEAFLEELNLGIALVDPQAIEKKKAAAAAEEEKKRIEWIQAQPWSRTVKEAAIKRQVIGGMNGAEVKKILGNPIRVSKVKAQLNVAEEHWLYADGSTAVFLNGLFNRIEPKRDTEPQPRAEE