Scaffold Ga0184626_10001939

Overview

Basic Information

• Taxon OID: 3300018053
• Scaffold ID: Ga0184626_10001939
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7464
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012957	Metagenome	275	Y
F013621	Metagenome	269	N
F071297	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0184626_100019391	F071297	N/A	LYLTALIKHSAVPVHSNWKAWLHKRAVQRKEVEALTAHGIHGIKISLDDTSLAEDISTALKKGKLKKVFDNVSLLPFSKTSTRI
Ga0184626_100019395	F013621	AGGA	MITQEEAKDFIRRYREVVLDTPAGEVHVCGSKEVYEELIGQGKLAFSPNELIHLQKAAENGSLETIVKIKSAIPGARIKDIIPVEKKPEATQKQS
Ga0184626_100019396	F012957	GGAG	MERTFLQALNLYRGKSALQISPSPELALVFVSLAPAIPGMENKMPDKNIKKYQWEKKLTASFNFEGALEVAAAAAALAQGREELVSGSDGTLPSWYRDPTKTGRDGSAKTIGFYRPKDQPKTPMVRYFLGITENKKDKQGNKIGISLEYPDLFKIARVMEEAALAILGWRKDIEGRREANGRSCGEE