Scaffold Ga0184638_1019877

Overview

Basic Information

• Taxon OID: 3300018052
• Scaffold ID: Ga0184638_1019877
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2370
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9195
  • Long. (^o): -106.9496

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060446	Metagenome	133	N
F084676	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0184638_10198771	F084676	AGCAGG	MQKTIVGRSSPAYFFVSARPGLSSNEARCPYKNKDLVTAHCLRRNRRQKGAIFDMSQPRLKLVWVNGTWLSTRKKIKLNSSAETGKGTHWFIKGWTWLRLNGSAISAVVLLIGAPWYLGRLYVQLENADQALYGDAGLIKRVNGLHNDVIWMKGFVTGTYGEKVVAQGYKKDEVKILPVRFSEPQSAGKLLFQTAEAASGRLQYN
Ga0184638_10198774	F060446	AGGAGG	MLKHYFVAVAVLFGWLSVGHGAEPKPKECDEAMALEAMRESRIETEFNRRGISDPVERITHRPEIEKQVDE